PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_A201C1A09.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 147aa    MW: 16916.3 Da    PI: 7.9922
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_A201C1A09.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1514.9e-1631081890
                   FAR1  18 kskkskrngeitkrtfvCskegkreeekkk..................................tekerrtraetrtgCkaklkvkke 71 
                            +s+k  ++ge +k++fvC+k  k++ ++                                    ++k+r++ +  +tgCkak+ vk  
  Traes_7BL_A201C1A09.2   3 SSRKDMKTGELIKQQFVCNKFRKPDVDEGGaekipvlddiveqakddnedeaivfldddskgktRSKKRKRDKIVQTGCKAKMIVKVI 90 
                            6788899*************999998887799******************************98889999999*************** PP

                   FAR1  72 kdgkwevtkleleHnHela 90 
                             dg+wev+ +++eHnH+l 
  Traes_7BL_A201C1A09.2  91 -DGRWEVIYFVSEHNHPLI 108
                            .****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-143108IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MNSSRKDMKT GELIKQQFVC NKFRKPDVDE GGAEKIPVLD DIVEQAKDDN EDEAIVFLDD  60
DSKGKTRSKK RKRDKIVQTG CKAKMIVKVI DGRWEVIYFV SEHNHPLIDK PCLTKYLRSH  120
QGIPPEERAF LTHLHNCNLT TGFEPHP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229498.12e-35PREDICTED: uncharacterized protein LOC100826282
RefseqXP_010229542.15e-36PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5HPJ11e-107W5HPJ1_WHEAT; Uncharacterized protein
STRINGMLOC_74313.11e-72(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]